Chancroid in South Africa: Painful Genital Ulcers & Testing | Epicentre
⚠ Haemophilus ducreyi · Bacterial · Genital Ulcer Disease

Chancroid: The Painful Ulcer That Isn't Syphilis

A painful, soft genital sore with ragged edges. Not the painless, firm sore of syphilis. Not the clusters of blisters from herpes. Chancroid is caused by a different bacterium entirely, and knowing which ulcer you have determines the treatment. Still present in sub-Saharan Africa. Curable. Major HIV co-factor.

✓ Curable with treatment ⚠ HIV risk significantly increased 🧬 PCR in Large/XL packages 🏥 No referral needed
curable with treatment
from your doctor
🩺
Medically Reviewed
Dr. Samantha Naidoo
MB ChB, FCP (SA) · Medical Director, Epicentre Laboratories
Published: 2 August 2025 · Last reviewed: 1 March 2026
What is it

What is chancroid and why does it matter?

Chancroid is caused by the bacterium Haemophilus ducreyi. Symptoms typically appear 4-7 days after exposure. It starts as a small bump that quickly becomes a painful, open ulcer with soft, ragged edges and a grey or yellowish base. Swollen, painful lymph nodes in the groin (buboes) often follow.

HIV co-factor: Genital ulcers from chancroid create direct entry points for HIV. In sub-Saharan Africa, chancroid has historically been one of the most significant co-factors in HIV transmission. Any genital ulcer should be investigated for both the ulcer cause and HIV status.
Rare but not gone: Chancroid has declined globally due to syndromic management and improved STI treatment. But it persists in parts of sub-Saharan Africa, particularly in communities with limited healthcare access. Under-diagnosis is likely because H. ducreyi is difficult to culture and PCR is not widely available.

Differential diagnosis

Which genital ulcer do I have: chancroid, syphilis, or herpes?

Three STIs cause genital ulcers, and they look different. This table helps you and your doctor narrow down the cause, but only PCR testing gives a definitive answer.

ChancroidSyphilisHerpes
PainPainfulPainlessPainful (burning/tingling)
Ulcer appearanceSoft, ragged edges, grey/yellow base, bleeds easilyFirm, round, clean edges, smooth baseClusters of small blisters, shallow ulcers when burst
NumberOne or a fewUsually one (chancre)Multiple small blisters/ulcers
Lymph nodesPainful, swollen (buboes)Swollen but usually painlessMay be swollen
Incubation4-7 days3-90 days (avg 21)2-12 days
Recurs?No (curable)Progresses in stagesYes (lifelong, recurring outbreaks)
Caused byHaemophilus ducreyi (bacterium)Treponema pallidum (bacterium)HSV-1 or HSV-2 (virus)
Epicentre testLarge/XL PCRExpress STI (RPR) or XL (PCR)All PCR packages (Small+)
"
"Any genital ulcer needs three things: identification of the cause, an HIV test, and syphilis screening. You cannot reliably tell the difference between chancroid, syphilis, and herpes by looking. PCR gives the answer. The Large panel at Epicentre covers all three ulcer causes in one swab. I always recommend adding an HIV screen at the same visit, because any open genital sore changes your HIV risk profile."
Dr. Samantha Naidoo, MB ChB, FCP (SA), Medical Director, Epicentre

Get tested

Where can I test for chancroid in South Africa?

H. ducreyi is extremely difficult to culture. PCR is the gold standard. Epicentre detects it in the Large and XL PCR packages.

Large Penile/Cervical (14-17 pathogens) ⭐ Includes H. ducreyi

R1,925🎓 R1,733

H. ducreyi + gonorrhoea + chlamydia + herpes + syphilis PCR + trich + M. genitalium + Ureaplasma + HPV + more. Best value for genital ulcer investigation.

4× R482/mo with Payflex

XL (35 pathogens) Includes H. ducreyi

R3,305🎓 R2,975

Complete panel: all STIs including H. ducreyi + BV + Candida + microbiome markers + syphilis PCR.

4× R827/mo with Payflex
Important: Small PCR (R1,235), Medium PCR (R1,508), and Express STI (R1,076) do not include H. ducreyi (chancroid). If you have a genital ulcer, the Large package (R1,925) is the recommended starting point because it covers chancroid, syphilis, and herpes in a single test.
Also add HIV and syphilis blood testing. Any genital ulcer significantly increases HIV risk. Consider adding the Express STI Package (R1,076) for HIV + syphilis RPR + Hep B alongside your PCR panel. Ask at the lab.

FAQ

Chancroid: Your Questions Answered

How is chancroid different from a syphilis sore?

Pain is the key difference. Chancroid ulcers are painful, soft, and bleed easily. Syphilis chancres are painless, firm, and round. Both are genital ulcers, but the bacterium, treatment, and consequences are different. PCR testing distinguishes them definitively. Read the syphilis guide →

Is chancroid common in South Africa?

Chancroid has declined in SA but has not been eliminated. It persists in communities with limited healthcare access. Under-diagnosis is likely because H. ducreyi is difficult to culture and most clinics do not have PCR capability.

Is chancroid curable?

Yes, completely. Treatment from your doctor clears the infection. Ulcers typically heal within 1-2 weeks. Swollen lymph nodes may take longer. Unlike herpes, chancroid does not recur after successful treatment.

Does chancroid increase HIV risk?

Yes, significantly. Open genital ulcers create direct entry and exit points for HIV. In sub-Saharan Africa, genital ulcer disease (including chancroid) has been a major driver of HIV transmission. Read the HIV guide →

Can I have chancroid and syphilis at the same time?

Yes. Co-infection with multiple ulcer-causing STIs is possible. This is why PCR testing is essential rather than clinical diagnosis alone. The Large package tests for chancroid, syphilis, and herpes simultaneously.

What if I have a genital ulcer and am not sure what it is?

Get tested. Do not try to self-diagnose based on appearance. The Large PCR package (R1,925) covers all three ulcer-causing STIs (chancroid, syphilis, herpes) plus additional pathogens. Add HIV screening (R168 standalone or in Express STI) at the same visit.

How much does chancroid testing cost?

Large (includes H. ducreyi): R1,925. XL: R3,305. Students 10% off. Payflex 4× interest-free. Note: Small, Medium, and Express do not include chancroid. View all packages →


STI guide

Other infections in this guide

Genital Ulcer? Don't Guess. Test.

Chancroid, syphilis, and herpes all cause genital ulcers. Only PCR tells you which one. The Large package covers all three.

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